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Bioinformatics  |  Biophysics  |  Core Facilities  |  Databases  |  Harvard, IDI and Children’s Hospital  |  Molecular Biology and Immunology  |  Research Tools  |  Software

 

Bioinformatics

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Biophysics

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Core Facilities

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Databases

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  • Biological Macromolecule Crystallization Database (BMCD)

  • CATH
    A hierarchical domain classification of protein structures by class, architecture, topology (fold family), and homologous superfamily

  • Dali Server
    Network service for comparing protein structures in 3D

  • Database of Macromolecular Movements
    Molecular motion classifications and movies

  • Entrez Protein Database

  • ExPASy Proteomics Server
    Links to ProtParam, Peptide Cutter, PSIpred. Analysis of protein sequences, structures, and 2D PAGE; links to databases, proteomics tools and software packages, molecular biology resources.

  • Heavy Atom Databank

  • HLDA Antibody Database
    Leukocyte workshop antibody and CD nomenclature

  • HOMSTRAD: Homologous Structure Alignment Database

  • Human Gene Mutation Database (HGMD)

  • Immunological Genome Project

  • Knockout Mouse Project (KOMP) - UC Davis

  • NCBI BLAST

  • NIH RePORT
    A database of biomedical research funded by the NIH

  • Pfam
    A large collection of protein families, each represented by multiple sequence alignments and hidden Markov models(HMMs)

  • PRINTS
    PRINTS is a compendium of protein fingerprints.

  • ProDom (Protein Domain Database)
    Automatic compilation of homologous domains; analyze domain arrangements of proteins and protein families

  • PROSITE
    Sites, patterns and profiles; various access and search tools; documentations; and more

  • Protein Data Bank (PDB)
    Information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. Biomolecular structure database; SearchFields; links to macromolecular structure related resources; and more

  • PubMed
    Search literature, Protein, Nucleotide, Genome, PopSet, OMIM, Taxonomy, Books, ProbeSet, and 3D Domains.

  • SCOP
    Structural classification of proteins by class, fold, superfamily, family, protein, and species.

  • Superfamily
    Database of structural and functional annotation for all proteins and genomes

  • UniProt
    The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.

  • VWF Database
    University of Sheffield ISTH-SSC VWF Online Database

  • WTSI Mouse Resources Portal (Sanger)
    Unified access to the different resources available from the Institute or its collaborators. The resources include: 129S7 and C57BL6/J bacterial artificial chromosomes (BACs), MICER gene targeting vectors, knock-out first conditional-ready gene targeting vectors, embryonic stem (ES) cells with gene targeted mutations or with retroviral gene trap insertions, mutant mouse lines, and phenotypic data generated from the Institute's primary screen.

Harvard, IDI and Children’s Hospital

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Molecular Biology and Immunology

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Research Tools

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Software

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